I also had the same requirement few days back
I used an full width and height svg and  added it below all my divs and added lines to these svg dynamically.
Checkout the how I did it here using svg 
HTML
<div id="ui-browser"><div class="anchor"></div>
     <div id="control-library" class="library">
       <div class="name-title">Control Library</div>
       <ul>
         <li>Control A</li>
         <li>Control B</li>
         <li>Control C</li>
         <li>Control D</li>
       </ul>
     </div><!--
--></div><!--
--><div id="canvas">
     <svg id='connector_canvas'></svg>
     <div class="ui-item item-1"><div class="con_anchor"></div></div>
     <div class="ui-item item-2"><div class="con_anchor"></div></div>
     <div class="ui-item item-3"><div class="con_anchor"></div></div>
     <div class="ui-item item-1"><div class="con_anchor"></div></div>
     <div class="ui-item item-2"><div class="con_anchor"></div></div>
     <div class="ui-item item-3"><div class="con_anchor"></div></div>
   </div><!--
--><div id="property-browser"></div>
https://jsfiddle.net/kgfamo4b/
    $('.anchor').on('click',function(){
   var width = parseInt($(this).parent().css('width'));
   if(width==10){
     $(this).parent().css('width','20%');
     $('#canvas').css('width','60%');
   }else{
      $(this).parent().css('width','10px');
     $('#canvas').css('width','calc( 80% - 10px)');
   }
});
$('.ui-item').draggable({
  drag: function( event, ui ) {
           var lines = $(this).data('lines');
           var con_item =$(this).data('connected-item');
           var con_lines = $(this).data('connected-lines');
           if(lines) {
             lines.forEach(function(line,id){
                    $(line).attr('x1',$(this).position().left).attr('y1',$(this).position().top+1);  
             }.bind(this));
           }
           if(con_lines){
               con_lines.forEach(function(con_line,id){
                  $(con_line).attr('x2',$(this).position().left)
                        .attr('y2',$(this).position().top+(parseInt($(this).css('height'))/2)+(id*5));
               }.bind(this));
           }
       }
});
$('.ui-item').droppable({
  accept: '.con_anchor',
  drop: function(event,ui){
     var item = ui.draggable.closest('.ui-item');
     $(this).data('connected-item',item);
     ui.draggable.css({top:-2,left:-2});
     item.data('lines').push(item.data('line'));
     if($(this).data('connected-lines')){
        $(this).data('connected-lines').push(item.data('line'));
         var y2_ = parseInt(item.data('line').attr('y2'));
         item.data('line').attr('y2',y2_+$(this).data('connected-lines').length*5);
     }else $(this).data('connected-lines',[item.data('line')]);
     item.data('line',null);
    console.log('dropped');
  }
});
$('.con_anchor').draggable({drag: function( event, ui ) {
     var _end = $(event.target).parent().position();
     var end = $(event.target).position();
     if(_end&&end)  
     $(event.target).parent().data('line')
                                                    .attr('x2',end.left+_end.left+5).attr('y2',end.top+_end.top+2);
},stop: function(event,ui) {
        if(!ui.helper.closest('.ui-item').data('line')) return;
        ui.helper.css({top:-2,left:-2});
        ui.helper.closest('.ui-item').data('line').remove();
        ui.helper.closest('.ui-item').data('line',null);
        console.log('stopped');
      }
});
$('.con_anchor').on('mousedown',function(e){
    var cur_ui_item = $(this).closest('.ui-item');
    var connector = $('#connector_canvas');
    var cur_con;
  if(!$(cur_ui_item).data('lines')) $(cur_ui_item).data('lines',[]);
  if(!$(cur_ui_item).data('line')){
         cur_con = $(document.createElementNS('http://www.w3.org/2000/svg','line'));
         cur_ui_item.data('line',cur_con);
    } else cur_con = cur_ui_item.data('line');
    connector.append(cur_con);
    var start = cur_ui_item.position();
     cur_con.attr('x1',start.left).attr('y1',start.top+1);
     cur_con.attr('x2',start.left+1).attr('y2',start.top+1);
});