This is the processing code that I ended up with.
With some CSS + javascript hide and toggle logic, it would work like google docs documentation.
I'd appreciate it if anyone updates this answer, with css or js.
import requests
from bs4 import BeautifulSoup
def render_gist_by_file(gist_id):
    result = requests.get(f'https://gist.github.com/{gist_id}.js', headers=git_credential)
    if result.text.startswith("<!DOCTYPE html>"):
      return None
    result = result.text
    result = result.replace("\\/", "/").replace("\\&", "&").replace("\\$", "$").replace("\\<", "<").replace("\\`", "`").replace("\\n", "\n").replace('\\"', '"')
    result = html.unescape(result)
    result = result.split("document.write('")[-1][:-3]
    bs = BeautifulSoup(result, "html.parser")
    for tag in bs.find_all(class_="gist"):
      file_box = tag.find(class_="file-box")
      root = tag.find(class_="file-box")
      toggle_div = bs.new_tag('div', attrs={"class": "gist-meta"})
      for i, d in enumerate(tag.find_all(class_="file")):
        d["class"] = f"file gist-toggle gist-id-{gist_id}"
        if i != 0:
          file_box.append(d)  # combine to first table
      for d in tag.find_all(class_="gist-meta"):
        siblings = list(d.next_elements)
        file_id, file_name = siblings[4].attrs["href"].split("#")[-1], siblings[5]
        gist.file_names.append(file_name)
        toggle_a = bs.new_tag('a', attrs={"id": file_id, "class": f"gist-toggle gist-id-{gist_id}", "onclick": f"toggle('gist-id-{gist_id}', '{file_id}')", "style": "padding: 0 18px"})
        toggle_a.append(file_name)
        toggle_div.append(toggle_a)
        d.extract()  # remove bottom nav
      root.insert(0, toggle_div)
      for d in islice(tag.find_all(class_="gist-file"), 1, None):
        d.extract()  # remove except first
    gist.html = str(bs)
    return gist