How to merge rows of a pandas dataframe

Question

I would like to merge pandas data frame records to one single record.

Given a dataframe like this:

patient_id  gender  age admission_id    admission_type  insurance_type  language    religion    marital_status  ethnicity   diagnosis   icustay_id  length_of_stay  BUN Creatinine  Hematocrit  Non Invasive Blood Pressure diastolic   Non Invasive Blood Pressure systolic
0   2365    F   51  117027  1   2   ENGL    CATHOLIC    SINGLE  WHITE   GASTROINTESTINAL BLEED  250042  22.9776 NaN 2.1 NaN NaN NaN
1   2365    F   51  117027  1   2   ENGL    CATHOLIC    SINGLE  WHITE   GASTROINTESTINAL BLEED  250042  22.9776 44.0    NaN NaN NaN NaN

Expected output:

patient_id  gender  age admission_id    admission_type  insurance_type  language    religion    marital_status  ethnicity   diagnosis   icustay_id  length_of_stay  BUN Creatinine  Hematocrit  Non Invasive Blood Pressure diastolic   Non Invasive Blood Pressure systolic
0   2365    F   51  117027  1   2   ENGL    CATHOLIC    SINGLE  WHITE   GASTROINTESTINAL BLEED  250042  22.9776 44 2.1 NaN NaN NaN

Have you tried merge? https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.merge.html — Nanthakumar J J, May 23 '21 at 15:08
Does this answer your question? [Combine two pandas Data Frames (join on a common column)](https://stackoverflow.com/questions/18792918/combine-two-pandas-data-frames-join-on-a-common-column) — ThePyGuy, May 23 '21 at 15:10
Please look clearly, here 2 records needs to be compressed to one. In the last 5 columns are like label encoding. — Bharath_Raja, May 23 '21 at 15:15

score 1 · Answer 1 · answered May 23 '21 at 15:15

1

You can do groupby with first ,notice here I assume the patient_id is the groupby key

out = df.groupby('patient_id').first()

answered May 23 '21 at 15:15

BENY

317,841
20
164
234

Over power. Worked like a charm. – Bharath_Raja May 23 '21 at 15:19
I got to group by all columns instead and then take mean. However worked like a charm! – Bharath_Raja May 23 '21 at 15:25

How to merge rows of a pandas dataframe

1 Answers1