I had the following tables in my dabatase: tbl_students and tbl_courses.
I have in mind a project for a music school where a student can sign for 1 or more courses, for example, when I register a student more than one course can be chosen, like guitar and piano, deppending on his choice (for now i'm registering students by myself so this is just hypothetical). 
I found that i had to deal with many to many relationships as 1 student can have many courses and in a course there are many students inscribed in them. 
The next step I did was creating an intermediate table that i called tbl_students_courses with the primary keys of both tables.
My tables look like this:
tbl_students
+---------+---------+---------------+---------+
|  st_id  | st_name |    st_email   | st_code |
+---------+---------+---------------+---------+
|    1    |John Doe | doe@gmail.com |  55555  |
+---------+---------+---------------+---------+
tbl_courses
+---------+-----------+--------------------------+
|  cr_id  |  cr_name  |         cr_desc          |
+---------+-----------+--------------------------+
|    1    |   Guitar  | Guitar course description|
+---------+-----------+--------------------------+
|    2    |   Bass    | Bass course description  |
+---------+-----------+--------------------------+
|    3    |   Violin  | Violin course description|
+---------+-----------+--------------------------+
|    4    |   Drums   | Drums course description |
+---------+-----------+--------------------------+
|    5    |   Piano   | Piano course description |
+---------+-----------+--------------------------+
tbl_students_courses
+---------+---------+---------+
|  st_id  |  cr_id  |date_insc|
+---------+---------+---------+
|  -----  |  -----  |  -----  |
+---------+---------+---------+
Now my problems are, I don't know how can i associate the tables with my php code. I assume that if i choose 2 courses when i sign up the student it should create 2 records on the intermediate table where only the cr_id differs from each other.
The other problem is getting the ID of the courses through the checkboxes with php, so when i select, for example, the piano and guitar checkboxes, it should return the id of both courses, run a query and insert the records.
Note: With my php code, the foreach loop is obviously just picking up the strings and not the ID of the course i wanted.
Here is my HTML:
<div class="form-group">
                   <label class="col-form-label">Select the courses</label>
                   <div class="form-check">
                       <div class="form-check form-check-inline">
                           <input class="form-check-input" name="course[]" type="checkbox" value="Guitar">
                           <label class="form-check-label" >Guitar</label>
                       </div>
                       <div class="form-check form-check-inline">
                           <input class="form-check-input" name="course[]" type="checkbox" value="Bass">
                           <label class="form-check-label" >Bass</label>
                       </div>
                       <div class="form-check form-check-inline">
                           <input class="form-check-input" name="course[]" type="checkbox" value="Violin">
                           <label class="form-check-label" >Violin</label>
                       </div>
                       <div class="form-check form-check-inline">
                           <input class="form-check-input" name="course[]" type="checkbox" value="Drums">
                           <label class="form-check-label" >Drums</label>
                       </div>
                       <div class="form-check form-check-inline">
                           <input class="form-check-input" name="course[]" type="checkbox" value="Piano">
                           <label class="form-check-label" >Piano</label>
                       </div>
                   </div>
Here is my PHP:
 <?php
            if (isset($_POST['submit'])) {
                include_once '../includes/functions.php';
                $studentName     = addslashes($_POST['sname']);
                $studentEmail    = addslashes($_POST['semail']);
                $studentCode     = intval($_POST['scode']);   
                $studentcourse    = $_POST['course'];   
                $query  = "INSERT INTO tbl_students (st_name, st_id, st_code) "
                . "VALUES ('$studentName', '$studentEmail', '$studentCode')";
                $link   = connection_db(); 
                $result = mysqli_query($link, $query);
        
                if($result){
                    $sql = "SELECT LAST_INSERT_ID()";
                    $result = mysqli_query($link, $sql);
                    $last = mysqli_fetch_assoc($result);
                    foreach($studentcourse as $value){
                        $data = date('Y-m-d H:i:s');
                        $lastID =($last["LAST_INSERT_ID()"]);
                        $sql = "INSERT INTO tbl_students_courses (st_id, cr_id, date_insc) VALUES ($lastID, '$value', '$data')";
                        $result = mysqli_query($link, $sql);
                    }
                    echo "<script>alert('Data saved successfully');</script>";
                    print "<script>top.location = 'index.php?id=2';</script>";
                } else {
                    echo "<script>alert('ERROR! Could not save data');</script>";
                }   
            }
        ?>
Any help or suggestions to improve the question are highly appreciated.
 
    