You can raise a matrix to a power following a similar procedure to taking the exponential of a matrix:
- Diagonalise the matrix, to give the eigenvectors
v_i and corresponding eigenvalues e_i.
- Raise the eigenvalues to the power,
{e_i}^{-1/2}.
- Construct the matrix whose eigenalues are
{e_i}^{-1/2} and whose eigenvectors are v_i.
It's worth noting that, as described here, this problem does not have a unique solution. In step 2 above, both {e_i}^{-1/2} and -{e_i}^{-1/2} will lead to valid solutions, so an N*N matrix A will have at least 2^N matrices B such that B^{-2}=A. If any of the eigenvalues are degenerate then there will be a continuous space of valid solutions.