This is a simple class to show 4 cases. Sorry for my english (is bad)
public static void main(String[] args) throws IOException {
    //TODO De temporal a archivo en directorio
    //TODO from file in temporary folder to file in common folder.
    File fromTemp_Dir = File.createTempFile("Temp_Dir_FROM", ".temp");
    File toTemp_Dir = new File ("Temp_Dir");        
    BufferedWriter bufferWriterTemp_DirFROM = new BufferedWriter(new FileWriter(fromTemp_Dir));
    bufferWriterTemp_DirFROM.write("Temp_Dir_FROM");
    bufferWriterTemp_DirFROM.close();
    BufferedWriter bufferWriterTemp_DirTO = new BufferedWriter(new FileWriter(toTemp_Dir));
    bufferWriterTemp_DirTO.write("Temp_Dir_TO");
    bufferWriterTemp_DirTO.close();
    System.out.println("fromTemp_Dir exist? "+fromTemp_Dir.exists());
    System.out.println("toTemp_Dir exist? "+toTemp_Dir.exists());
    toTemp_Dir.delete();
    if (!fromTemp_Dir.renameTo(toTemp_Dir)){
        System.out.println("rename fail 'De temporal a archivo en directorio'");
    }else {
        System.out.println("Rename successful 'De temporal a archivo en directorio'");
    } 
    //TODO De archivo a temporal
    //TODO from file in common folder to file in temporary folder.
    File fromDir_Temp = new File ("Dir_FROM");
    File toDir_Temp = File.createTempFile("Dir_Temp_TO", ".temp");
    BufferedWriter bufferWriterDir_TempFROM = new BufferedWriter(new FileWriter(fromDir_Temp));
    bufferWriterDir_TempFROM.write("Dir_Temp_FROM");
    bufferWriterDir_TempFROM.close();
    BufferedWriter bufferWriterDir_TempTO = new BufferedWriter(new FileWriter(toDir_Temp));
    bufferWriterDir_TempTO.write("Dir_Temp_TO");
    bufferWriterDir_TempTO.close();
    toDir_Temp.delete();
    if (!fromDir_Temp.renameTo(toDir_Temp)){
        System.out.println("rename fail 'De archivo en directorio a temporal'");
    } else{
        System.out.println("rename successful 'De archivo en directorio a temporal'");
    }
    //TODO De temporal a temporal
    //TODO from temporary folder to temporary folder
    File fromTemp = File.createTempFile("archivoTempFROM_", ".temp");
    File toTemp = File.createTempFile("archivoTempTO_", ".temp");
    BufferedWriter bufferWriterFROMTemp = new BufferedWriter(new FileWriter(fromTemp));
    bufferWriterFROMTemp.write("archivoTempFROM");
    bufferWriterFROMTemp.close();
    BufferedWriter bufferWriterTOTemp = new BufferedWriter(new FileWriter(toTemp));
    bufferWriterTOTemp.write("archivoTempTO");
    bufferWriterTOTemp.close();
    toTemp.delete();
    if (!fromTemp.renameTo(toTemp)){
        System.out.println("rename fail 'De temporal a temporal'");
    }else {
        System.out.println("Rename successful 'De temporal a temporal'");
    } 
    //TODO De archivo a archivo en directorio
    //TODO from file in common directory to file in common directory 
    File fromDir = new File("archivoDirFROM");
    File toDir = new File("archivoDirTO");
    BufferedWriter bufferWriterFROMDir = new BufferedWriter(new FileWriter(fromDir));
    bufferWriterFROMDir.write("archivoDirFROM");
    bufferWriterFROMDir.close();
    BufferedWriter bufferWriterTODir = new BufferedWriter(new FileWriter(toDir));
    bufferWriterTODir.write("archivoDirTO");
    bufferWriterTODir.close();
    toDir.delete();
    if (!fromDir.renameTo(toDir)){
        System.out.println("rename fail 'De archivo a archivo en directorio'");
    }else {
        System.out.println("Rename successful 'De archivo a archivo en directorio'");
    } 
}
Show in my console
fromTemp_Dir exist? true
toTemp_Dir exist? true
rename fail 'De temporal a archivo en directorio'
rename fail 'De archivo en directorio a temporal'
Rename successful 'De temporal a temporal'
Rename successful 'De archivo a archivo en directorio'
This class works on some PCs but not in other PC (tested in 7 PCs, 5 work, 2 not work), all with ubuntu installed.
Supposedly it is a permissions problem but I have set the PC as administrator and root.
I tried with gksu and sudo, but does not work.
Any solution?
Thanks.