3.3V is used by some minor chips like Super I/O, audio codec, etc, but nowadays the largest consumer is M.2 devices, like SSDs, that typically use up to ~10W each. PCIe also has a 3.3V supply besides 12V, that again might be used for some minor chips on cards.
3.3V is also present on older SATA power connectors, but was obsoleted in newer versions and therefor not guaranteed to be present anymore. It's not a problem as no modern device uses it anymore, and it's even likely to cause problems at it interferes with SATA's PWDIS functionality, which means your HDD will not spin-up with the voltage present.
Besides USB, 5V is used by SATA devices, sometimes exclusively as with 2.5" SSDs and HDDs, or partially for the control electronics in 3.5" HDDs, which additionally use 12V for the motor.
Anything else typically uses the 12V rail indirectly through it's own power conversion. For example your example of CPU and DRAM, both have their own power conversion.